1. Genetic similarity networks reveal malaria strain structure
Q. He, S. Pilosof, K. E. Tiedje, S. Ruybal-Pesántez, Y. Artzy-Randrup, E. B. Baskerville, K. P. Day & M. Pascual. Networks of genetic similarity reveal the role of non-neutral processes in shaping the strain structure of Plasmodium falciparum. Nature Communications, 2018
2. X-Origin pipeline: Inferring Geographic Origin of Expansion Under Heterogeneous Spacetime!
Q. He, J. Padro, L. L. Knowles. 2017. Inferring the geographic origin of a range expansion: latitudinal and longitudinal coordinates inferred from genomic data in an ABC framework with the program X-ORIGIN. Mol. Ecol.
4. Disentangle selection signature from neutral processes within inversions
Q. He, L. L. Knowles. 2016. Identifying targets of selection in mosaic genomes with machine learning: applications in Anopheles gambiae for detecting sites within locally adapted chromosomal inversions. Mol. Ecol. DOI: 10.1111/mec.13619